PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G12740.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 444aa    MW: 48006.1 Da    PI: 8.5087
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G12740.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.9e-115982326
                     S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                     ++ C++++rtG C++G +CkF+H+
  ONIVA11G12740.3 59 EPDCSYYMRTGLCRFGMTCKFNHP 82
                     789********************8 PP

2zf-CCCH38.81.5e-12104128327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  ONIVA11G12740.3 104 QPECQYYLKTGTCKFGATCKFHHPR 128
                      799********************96 PP

3zf-CCCH36.67.6e-12150174327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  ONIVA11G12740.3 150 EKECAYYLRTGQCKFGSTCKFHHPQ 174
                      679********************97 PP

4zf-CCCH39.59.1e-13311336227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+f+++tG Ck+G+ CkF+H++
  ONIVA11G12740.3 311 DQPECQFYMKTGDCKFGAVCKFHHPK 336
                      689*********************96 PP

5zf-CCCH38.42.1e-12356382127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f++r+G+Ck+G++CkF H++
  ONIVA11G12740.3 356 PGEPICTFYSRYGICKFGPNCKFDHPM 382
                      5799*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-45683IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8685684IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-85982IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-56184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-46283IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6104130IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5107129IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5147174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619147175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-6147175IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9150174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4153173IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5309336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511309337IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9311336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5312337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4315336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6354381IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7355382IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178355383IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9357382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4360380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAAAPSAGGV GEGSSSSAAA AAAAAAATIG PHVVDEEAMW QMNLGEAMEA GPYPERIGEP  60
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGTCKFGA  120
TCKFHHPREK AAIATRVQLN ALGYPLRPNE KECAYYLRTG QCKFGSTCKF HHPQPSNTMV  180
AVRGSVYSPG QSVTSPSQHT YPGAVTNWPL SRSASFIASP RWPGHSSYAQ VIVPPGLVQV  240
PGWNPYAAQI GSSSSDDQQR TAGGAQYYTG SRHSETPNMG DQGMFSSYQA GSVPLGLYTV  300
QRESIFPERP DQPECQFYMK TGDCKFGAVC KFHHPKERII PTPNCALSSL GLPLRPGEPI  360
CTFYSRYGIC KFGPNCKFDH PMGTVMYGLA TSPTGDVSAR RMLAPVPAHS EVSPDNVSGR  420
SRRITHSDSQ QIPSGERGTE REAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.10.0PREDICTED: zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0J1U00.0A0A0E0J1U0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0R8980.0A0A0E0R898_ORYRU; Uncharacterized protein
TrEMBLU5KNJ10.0U5KNJ1_ORYSJ; Zinc finger protein
STRINGLOC_Os11g28270.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-159zinc finger protein 1